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Prioritizing drug target genes with Marie Sadler
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Suffix arrays in optimal compressed space and δ-SA with Tomasz Kociumaka and Dominik Kempa
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Phylogenetic inference from raw reads and Read2Tree with David Dylus
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AlphaFold and variant effect prediction with Amelie Stein
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AlphaFold and shape-mers with Janani Durairaj
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AlphaFold and protein interactions with Pedro Beltrao
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Enformer: predicting gene expression from sequence with Žiga Avsec
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Bioinformatics Contest 2021 with Maksym Kovalchuk and James Matthew Holt
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Steady states of metabolic networks and Dingo with Apostolos Chalkis
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3D genome organization and GRiNCH with Da-Inn Erika Lee
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Differential gene expression and DESeq2 with Michael Love
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Proteomics calibration with Lindsay Pino
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B cell maturation and class switching with Hamish King
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Enhancers with Molly Gasperini
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Polygenic risk scores in admixed populations with Bárbara Bitarello
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Phylogenetics and the likelihood gradient with Xiang Ji
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Seeding methods for read alignment with Markus Schmidt
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Real-time quantitative proteomics with Devin Schweppe
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How 23andMe finds identical-by-descent segments with William Freyman
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Basset and Basenji with David Kelley
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ENCODE3 with Jill Moore
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Most Permissive Boolean Networks with Loïc Paulevé
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Machine learning for drug development with Marinka Zitnik
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Reproducible pipelines and NGLess with Luis Pedro Coelho
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HiFi reads and HiCanu with Sergey Nurk and Sergey Koren
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Genome assembly and Canu with Sergey Koren and Sergey Nurk
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DNA tagging and Porcupine with Kathryn Doroschak
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Generalized PCA for single-cell data with William Townes
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Spectrum-preserving string sets and simplitigs with Amatur Rahman and Karel Břinda
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Epidemic models with Kris Parag
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Plasmid classification and binning with Sergio Arredondo-Alonso and Anita Schürch
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Amplicon sequence variants and bias with Benjamin Callahan
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Issues in legacy genomes with Luke Anderson-Trocmé
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Causality and potential outcomes with Irineo Cabreros
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scVI with Romain Lopez and Gabriel Misrachi
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The role of the DNA shape in transcription factor binding with Hassan Samee
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Power laws and T-cell receptors with Kristina Grigaityte
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Genome assembly from long reads and Flye with Mikhail Kolmogorov
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Deep tensor factorization and a pitfall for machine learning methods with Jacob Schreiber
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Bioinformatics Contest 2019 with Alexey Sergushichev and Gennady Korotkevich
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Bayesian inference of chromatin structure from Hi-C data with Simeon Carstens
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Haplotype-aware genotyping from long reads with Trevor Pesout
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Space-efficient variable-order Markov models with Fabio Cunial
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Classification of CRISPR-induced mutations and CRISPRpic with HoJoon Lee and Seung Woo Cho
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Feature selection, Relief and STIR with Trang Lê
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Transposons and repeats with Kaushik Panda and Keith Slotkin
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Read correction and Bcool with Antoine Limasset
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RNA design, EteRNA and NEMO with Fernando Portela
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smCounter2: somatic variant calling and UMIs with Chang Xu
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Linear mixed models, GWAS, and lme4qtl with Andrey Ziyatdinov
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B cell receptor substitution profile prediction and SPURF with Kristian Davidsen and Amrit Dhar
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Genome fingerprints with Gustavo Glusman
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Bioinformatics Contest 2018 with Alexey Sergushichev and Ekaterina Vyahhi
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Rarefaction, alpha diversity, and statistics with Amy Willis
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Javier Quilez on what makes large sequencing projects successful
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Optimal transport for single-cell expression data with Geoffrey Schiebinger
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Generating functions for read mapping with Guillaume Filion
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Bracken with Jennifer Lu
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Modelling the immune system and C-ImmSim with Filippo Castiglione
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Collective cell migration with Linus Schumacher
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Spatially variable genes and SpatialDE with Valentine Svensson
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Michael Tessler and Christopher Mason on 16S amplicon vs shotgun sequencing
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Perfect k-mer hashing in Sailfish
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Metagenomics and Kraken
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Allele-specific expression
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Relative data analysis and propr with Thom Quinn
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ChIP-seq and GenoGAM with Georg Stricker and Julien Gagneur
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miRNA target site prediction and seedVicious with Antonio Marco
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Single-cell RNA sequencing with Aleksandra Kolodziejczyk
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Transcriptome assembly and Scallop with Mingfu Shao
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